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Protein Mass Analysis using LC-MS

Protein Molecular Weight Analysis

Molecular Weight Determination by LC-MS

The intact molecular weight has always been recognized as an important characteristic of biologics. Intact molecular weight analysis is used to demonstrate the protein/peptide products and verify the biologics. Measuring molecule weight is a requirement of the regulatory guidelines.

Yaohai Bio-Pharma offers intact molecular weight analysis under native, reduced, N-deglycosylated conditions. We employ Liquid Chromatography-Mass Spectrometry (LC-MS) to determine the intact molecular weight.

Regulatory Requirements for Molecular Weight

It is recommended in the ICH Q6 that “molecular weight (or size) is determined using size exclusion chromatography, SDS-polyacrylamide gel electrophoresis (under reducing and non-reducing conditions), mass-spectrometry (MS), and other appropriate techniques”.

Analytical Methods
Analysis Methods
Molecular Weight LC-MS / Liquid Chromatography/Electrospray Mass Spectrometry (LC/ES-MS) of native, reduced, N-deglycosylated proteins or subunit
Analytical Procedures

Intact Molecular Weight:

  • Performing LC-MS on the native sample as received.
  • LC-MS Data analysis.

Reduced Molecular Weight:

  • Treating the protein sample with a suitable reducing agent;
  • Performing LC-MS on the reduced protein;
  • LC-MS Data analysis.

N-deglycosylated Molecular Weight:

  • Removing the N-glycans with a suitable enzyme;
  • Performing LC-MS on the N-deglycosylated protein;
  • LC-MS Data analysis.

Reduced and N-deglycosylated Molecular Weight:

  • Treating the protein sample with a suitable reducing agent;
  • Removing the N-glycans with a suitable enzyme;
  • Performing LC -MS on Reduced and N-deglycosylated protein;
  • LC-MS Data analysis.

Protein Subunit Molecular Weight:

  • Subunit Cleavage
  • Performing LC-MS on Protein Subunit
  • LC-MS Data Analysis
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